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How to Install and Run OpenMM Molecular Dynamics Simulations on a GPU

A practical OpenMM 8.6 setup guide: choose the GPU backend for your hardware, install with conda-forge or pip, verify GPU availability, and request the intended platform.
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To run OpenMM on a GPU, install a backend that matches your hardware—CUDA for NVIDIA, HIP for ROCm-compatible AMD, or OpenCL where supported—then verify the installation and explicitly select the platform if needed. OpenMM’s User Guide 8.6 documents conda-forge and pip routes; package extras, drivers, and runtime support can change, so check the current installation guide before copying a command. The instructions below reflect that guide as accessed October 4, 2026.

Choose the GPU backend that matches your hardware

OpenMM 8.6 lists five platforms: Reference, CPU, CUDA, OpenCL, and HIP. CUDA is the documented choice for NVIDIA GPUs. HIP is recommended for ROCm-compatible AMD GPUs; OpenCL is another option and can support a range of GPU and CPU devices. The OpenMM library guide says AMD OpenCL is usually slower than HIP. Reference prioritizes simplicity over performance, while CPU is often practical when a fast GPU is unavailable; a custom force workload may behave differently. See the OpenMM platform overview for platform details.

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  • NVIDIA: choose CUDA and install a current NVIDIA driver.
  • AMD: choose HIP on ROCm-compatible hardware and install current AMD drivers plus HIP/ROCm. OpenCL is an alternative where supported.
  • Other OpenCL-capable devices: OpenCL may be available, including on some Intel or Apple GPUs as described in the guide; availability depends on the device and its software support.

Installing OpenMM does not establish that a particular device or workload will benefit from GPU execution. Compatibility depends on the backend, operating system, driver/runtime, and simulation.

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Install OpenMM

The OpenMM 8.6 guide documents both conda-forge and pip. Use one package-management route in the environment where you intend to run your Python simulation, and follow the live guide for the currently supported backend/runtime combinations.

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Option 1: conda-forge

Install the package with:

conda install -c conda-forge openmm

According to the guide, recent conda versions install an OpenMM build using the latest CUDA version supported by the drivers. To request a CUDA build explicitly, its example is:

conda install -c conda-forge openmm cuda-version=12

The guide says its conda packages are built for CUDA 12 and above and warns that CUDA releases are not binary compatible: OpenMM must match the CUDA version it was compiled with. Treat the example as version-specific, not a permanent setting; check the current guide for supported combinations.

Option 2: pip

The base package and documented GPU extras are:

pip install openmm
pip install 'openmm[cuda12]'
pip install 'openmm[hip6]'

The OpenMM 8.6 guide also lists the CUDA 13 extra and HIP 7 extra. Use the extra matching the supported backend and runtime for your system. The base pip package includes OpenCL, CPU, and Reference; request CUDA or HIP with the corresponding extra. Keep the quotes around bracketed extras in shells that might interpret brackets. Consult the current guide for exact extras and prerequisites.

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Install drivers and verify the installation

Install current drivers from the GPU vendor before diagnosing why OpenMM does not find a device. In the documented package route, CUDA is installed automatically; NVIDIA drivers are still required. For AMD’s recommended HIP backend, the guide calls for current AMD drivers and HIP/ROCm. It also notes that macOS includes OpenCL.

Run the installation check in the same Python environment where OpenMM was installed:

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python -m openmm.testInstallation

This check confirms that OpenMM is installed, reports whether GPU acceleration is available through CUDA, OpenCL, and/or HIP, and checks consistency across platforms. It is an installation check—not a benchmark and not proof that a later simulation uses a particular GPU.

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Make a simulation use the intended platform

OpenMM ordinarily tries to select the fastest available platform. To override that choice, set OPENMM_DEFAULT_PLATFORM or pass a platform object when constructing the simulation. The following fragment illustrates explicit CUDA selection; it assumes your program has already created topology, system, and integrator and imported the relevant OpenMM classes:

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platform = Platform.getPlatform('CUDA')
simulation = Simulation(topology, system, integrator, platform)

Replace CUDA with the platform appropriate to your installation if you are using HIP or OpenCL. Explicit selection makes the requested platform clear; it does not make an unsupported device or incompatible driver work. For the broader simulation API and platform controls, see OpenMM’s Running Simulations chapter.

Installation is not a complete molecular-dynamics protocol

These steps install OpenMM, check backend availability, and show how to request a platform. They do not define how to prepare a molecule, choose a force field, solvate or minimize a system, equilibrate it, select an ensemble or timestep, apply restraints, or analyze trajectories. Those choices depend on the molecular system and scientific question; a GPU-enabled run is not by itself evidence that a protocol is scientifically appropriate. Use the current official running-simulations guide alongside system-specific methods for those decisions.

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