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How WSL 2, Incus, Containers, and Virtual Machines Fit Together

WSL 2 runs Linux in a managed utility VM. Learn how its distributions, application containers, Incus system containers, and Incus VMs differ.
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WSL 2 is itself built on a virtual machine, but its Linux distributions are not separate VMs. Windows runs a managed utility VM with a Linux kernel; WSL distributions run inside it, and application containers can run within a Linux environment. Incus is a separate manager for Linux system containers and virtual machines: its system containers share the host kernel, while its VMs run a guest kernel.

The layers: Windows, WSL 2, and Linux containers

A useful simplified view of WSL 2 is:

Windows host → WSL-managed utility VM and Linux kernel → WSL distribution(s) → optional application containers

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Microsoft describes WSL 2 as using virtualization to run a Linux kernel inside a lightweight utility VM. Windows manages that VM, so you can use Linux environments without operating a conventional VM manually. That convenience does not remove the VM layer. Microsoft’s WSL overview explains the architecture.

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WSL distributions are isolated environments within the managed VM, not one full VM per distribution. They share some underlying resources, including the VM’s CPU, kernel, memory, swap, and network namespace. They have separate PID, mount, user, and cgroup namespaces. The distinction matters if you are reasoning about kernels, isolation, or resource boundaries.

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An application container can run inside a WSL Linux environment. It packages an application or service and its dependencies, but it shares the Linux kernel provided by its host environment. It is not a miniature VM with its own kernel.

What “container” means in this comparison

The word container can refer to two different models here. An application container is built around running an application or component. An Incus system container provides a fuller Linux user-space environment, often with multiple processes or services. Both share a Linux kernel with their host; neither supplies its own guest kernel.

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Incus is a management layer for Linux instances, not another layer built into WSL. It can manage system containers and VMs, and it can also use OCI-compatible application-container images. Those capabilities do not make its system containers the same thing as application containers: the terms describe different workloads and operating-system environments.

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How an Incus system container differs from an Incus VM

An Incus system container supplies a Linux distribution’s user space while relying on the host’s Linux kernel. An Incus VM runs a guest operating system with its own kernel using hardware virtualization. As Incus puts it, “A system container can only be based on the Linux kernel.” Its guidance is to use a VM when you need functionality unavailable in the host kernel or want to run a different OS. See Incus: About containers and VMs.

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The core dividing line is therefore the kernel boundary, not simply how large or complete an environment feels. A container depends on the host Linux kernel. A VM can provide another kernel and can run a different operating system. Containers and VMs can also be nested: for example, an application container can run inside a Linux system that itself runs in a VM.

Which model fits the job?

Need Suitable model Why
Package one application or service with its dependencies Application container Application-focused packaging; shares the host Linux kernel. Incus documentation.
Provide a fuller Linux environment with several processes or services, compatible with the host kernel Incus system container Provides Linux user space while sharing the host kernel. Incus documentation.
Use another kernel or OS, kernel modules, or certain device passthrough Incus VM Runs a guest kernel and supports a separate guest operating system. Incus documentation.
Use Linux tools integrated with a Windows desktop without manually operating a conventional VM WSL 2 Windows manages the lightweight VM and Linux environment. Microsoft’s WSL overview.

These are architectural distinctions, not a universal speed or security ranking. The cited documentation does not establish comparable benchmarks or a single security score for these options. Choose based on the kernel and operating-system boundary your workload needs, then consider the operational details of the platform you will run.

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WSL 2 details that still matter

Because Windows hides much of the VM management, it is easy to overlook consequences of the virtualized environment. Networking and filesystem placement remain relevant. Microsoft specifically notes that performance can be affected when project files and tools are on different operating-system filesystems; avoid assuming that every file-location arrangement behaves alike. See Microsoft’s WSL file-system guidance.

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Incus documentation describes a Windows client, but that fact alone does not establish that a Windows WSL distribution is a supported general-purpose host for an Incus server. Treat running an Incus server inside WSL as conditional, and verify current Incus support instructions before relying on that setup. See Incus installation documentation.

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