Side by side

Graphs vs VplotR

Both stand on data visualization software. Which one you can start free with, which one lets you read the code, and what each costs once you pay.

Graphs

Free plan Linux

Choose Graphs if you want a free Linux desktop tool for data plotting, transformations, fitting, and figure export. Look elsewhere if you need a non-Linux platform, scheduled dashboard refresh, or embedded dashboards.

Visit Graphs

VplotR

Free plan LinuxMacWindows

VplotR focuses on specialized visualization and fragment analysis for DNA-accessibility sequencing. Its Bioconductor and ggplot2 integration, example data, and normalization options support research workflows, provided the R requirement is met.

Visit VplotR

The facts

	Graphs	VplotR
Free plan	Yes	Yes
Open source	Not published	Not published
Runs on	Linux	Linux, Mac, Windows
Lowest paid plan	Free or on request	Free or on request
Plans published	1	1
Maker	Not published	Not published
Website	apps.gnome.org	jserizay.com
On data visualization software	#49 of 98	#53 of 98

Graphs: what it does well

Imports spreadsheets, text, database, and specialized data files.
Creates datasets from equations and plots equations continuously.
Offers predefined curve fits and custom equations.
Fit analysis can include confidence bands and residual plots.
Custom styles control plot elements from colors to grids.

What to know first

Available platform is Linux only.
It is a desktop application rather than a hosted dashboard.
Scheduled refresh and embedded dashboards are not supported.

VplotR: what it does well

Imports ATAC-seq, DNA-seq, and MNase-seq BAM files
Creates V-plots and footprint profiles
Supports several normalization methods
Works with ggplot2 and Bioconductor
Includes example sequencing datasets

What to know first

Requires R version 4.0 or later
It is a desktop R package, not a hosted service
Parallel plotting requires configuring parameters and cores

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