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FSharpGephiStreamer vs PathVisio

Both stand on data visualization software. Which one you can start free with, which one lets you read the code, and what each costs once you pay.

FSharpGephiStreamer

Free plan APILinuxMac+1

FSharpGephiStreamer provides a focused bridge between F# Interactive and Gephi. It is useful when your workflow already uses the required local tools and needs streamed graph updates.

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PathVisio

Free plan LinuxMacWindows

PathVisio provides cross-platform pathway drawing and analysis with broad dataset and plugin support at no cost. Users should account for its drawing-based model, Java 8 requirement, and current WikiPathways upload issue.

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The facts

FSharpGephiStreamerPathVisio
Free planYesYes
Open sourceNot publishedNot published
Runs onAPI, Linux, Mac, WindowsLinux, Mac, Windows
Lowest paid planFree or on requestFree or on request
Plans published11
MakerNot publishedPathVisio
Websitecsbiology.github.iopathvisio.org
On data visualization software#48 of 98#44 of 98

FSharpGephiStreamer: what it does well

  • Free MIT-licensed library
  • Converts custom nodes and edges
  • Adds, updates, and removes graph elements
  • Supports multiple graph attributes
  • Available through NuGet

What to know first

  • Requires local F#, Java, and Gephi installations
  • Requires Gephi Graph Streaming plugin
  • Connection needs IP, port, and workspace settings

PathVisio: what it does well

  • Free open-source desktop software
  • Runs on Linux, macOS, and Windows
  • Supports several common microarray types
  • Plugin repository extends Java application
  • Works offline after installation

What to know first

  • Version 3.x requires Java 8
  • Dynamic pathway layouts are not supported
  • Plugin manager requires an internet connection
  • WikiPathways uploads are currently not working

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